Software Development
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a more effective platform and comprehensive taxonomical and functional analyses of microbial communities. | Version 1.0 |
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an alternative framework to better represent the real species-species co-occurrence
network
M Click to see softwares & databases in Microbiome field |
Version 1.0 |
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Scripts for MH(E)I (Microbial-based Human / Environment Index) classifer.
M Click to see softwares & databases in Microbiome field |
Version 1.0 |
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A novel quality control pipeline
O Click to see softwares & databases in Other field(Data mining, HPC, syn-bio, etc.) |
Version 1.0 |
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Optimization and assessment of subspecies identification based on accurate variant
modeling
M Click to see softwares & databases in Microbiome field |
Version 1.0 |
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A Parallel Metagenomic Analysis Pipeline
M Click to see softwares & databases in Microbiome field |
Version 3.1 Version 2.4 Version 2.3 |
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A Parallel Quality Control computational engine for NGS data
O Click to see softwares & databases in Other field(Data mining, HPC, syn-bio, etc.) |
Version 1.0
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A Metagenomic Database system toolkit
M Click to see softwares & databases in Microbiome field |
Version 1.2 GPU 1.0 |
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An Metagenomic Database & Analysis system
M Click to see softwares & databases in Microbiome field |
Beta Version |
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A Metagenomic Visualization toolkit
M Click to see softwares & databases in Microbiome field |
Version 1.0 |
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A High Efficient SNP Detection Software
O Click to see softwares & databases in Other field(Data mining, HPC, syn-bio, etc.) |
Version 1.0 |
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A Metagenomic functional biomakrer analysis
M Click to see softwares & databases in Microbiome field |
Version Beta |
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A pipeline of quality control tools for next generation sequencing data
O Click to see softwares & databases in Other field(Data mining, HPC, syn-bio, etc.) |
In Pogress |
Phylogenetic Analysis |
A Parallel Phylogenetic Analysis software | In Progress |
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A Raman Spectrum Acquisition and Analysis System for Single-Cell Research
P Click to see softwares & databases in Pan-genome and single-cell field |
In Progress |
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A Multiple Phenotypes Simulation System for Single-Cell Research
P Click to see softwares & databases in Pan-genome and single-cell field |
In Progress |
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CLM model is a cluster-based linear model for prediction of protein abundance from gene
expression.
O Click to see softwares & databases in Other field(Data mining, HPC, syn-bio, etc.) |
Version 1.0 |
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Next-Generation Digital Information storage in DNA
O Click to see softwares & databases in Other field(Data mining, HPC, syn-bio, etc.) |
Version 1.0 |
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The iMOD Matlab package is for single-cell Raman spectrum quality control (QC), Spectrum
discretization, single-cell classification and biomarker identification.
P Click to see softwares & databases in Pan-genome and single-cell field |
Version 1.0 |
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A machine learning framework of taxonomical biomarker discovery for different microbial communities
based on metagenomic data
M Click to see softwares & databases in Microbiome field |
Version 1.0 |
Database Development
| an integration of database and a data-mining system for network pharmacology analysis of
TCM preparations.
O Click to see softwares & databases in Other field(Data mining, HPC, syn-bio, etc.) |
Version 1.0 | |
| A taxonomy classification platform based on multiple DNA biomarkers and search engines
hosted at NingLab@HUST
O Click to see softwares & databases in Other field(Data mining, HPC, syn-bio, etc.) |
Version 1.0 | |
| Microbiome SysEcoKit (MSE) is your one-stop microbiome cloud platform for data
searching, depository, processing and analysis
M Click to see softwares & databases in Microbiome field |
Version 1.0 | |
| An Algae Database
M Click to see softwares & databases in Microbiome field |
Version 1.0 | |
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Automatic Metagenomic Data
M Click to see softwares & databases in Microbiome field |
In Progress |
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A Raman Spectra Database for Single-Cell Research from RACS system
P Click to see softwares & databases in Pan-genome and single-cell field |
Version 1.0 |
TCM-Mesh
Holmes-ITS2 Database
SysToolKit
EnergyAlgaeDB
Others
| HUST Ningkang-Lab @Github | Updated | |
| Campus Microbiome Project | Version 1.0 |
Ningkang Lab
Campus Microbiome